Brian Silverman | 72890c2 | 2015-09-19 14:37:37 -0400 | [diff] [blame] | 1 | namespace Eigen { |
| 2 | |
| 3 | namespace internal { |
| 4 | |
| 5 | template <typename Scalar> |
| 6 | void covar( |
| 7 | Matrix< Scalar, Dynamic, Dynamic > &r, |
| 8 | const VectorXi &ipvt, |
| 9 | Scalar tol = std::sqrt(NumTraits<Scalar>::epsilon()) ) |
| 10 | { |
| 11 | using std::abs; |
| 12 | typedef DenseIndex Index; |
| 13 | |
| 14 | /* Local variables */ |
| 15 | Index i, j, k, l, ii, jj; |
| 16 | bool sing; |
| 17 | Scalar temp; |
| 18 | |
| 19 | /* Function Body */ |
| 20 | const Index n = r.cols(); |
| 21 | const Scalar tolr = tol * abs(r(0,0)); |
| 22 | Matrix< Scalar, Dynamic, 1 > wa(n); |
| 23 | eigen_assert(ipvt.size()==n); |
| 24 | |
| 25 | /* form the inverse of r in the full upper triangle of r. */ |
| 26 | l = -1; |
| 27 | for (k = 0; k < n; ++k) |
| 28 | if (abs(r(k,k)) > tolr) { |
| 29 | r(k,k) = 1. / r(k,k); |
| 30 | for (j = 0; j <= k-1; ++j) { |
| 31 | temp = r(k,k) * r(j,k); |
| 32 | r(j,k) = 0.; |
| 33 | r.col(k).head(j+1) -= r.col(j).head(j+1) * temp; |
| 34 | } |
| 35 | l = k; |
| 36 | } |
| 37 | |
| 38 | /* form the full upper triangle of the inverse of (r transpose)*r */ |
| 39 | /* in the full upper triangle of r. */ |
| 40 | for (k = 0; k <= l; ++k) { |
| 41 | for (j = 0; j <= k-1; ++j) |
| 42 | r.col(j).head(j+1) += r.col(k).head(j+1) * r(j,k); |
| 43 | r.col(k).head(k+1) *= r(k,k); |
| 44 | } |
| 45 | |
| 46 | /* form the full lower triangle of the covariance matrix */ |
| 47 | /* in the strict lower triangle of r and in wa. */ |
| 48 | for (j = 0; j < n; ++j) { |
| 49 | jj = ipvt[j]; |
| 50 | sing = j > l; |
| 51 | for (i = 0; i <= j; ++i) { |
| 52 | if (sing) |
| 53 | r(i,j) = 0.; |
| 54 | ii = ipvt[i]; |
| 55 | if (ii > jj) |
| 56 | r(ii,jj) = r(i,j); |
| 57 | if (ii < jj) |
| 58 | r(jj,ii) = r(i,j); |
| 59 | } |
| 60 | wa[jj] = r(j,j); |
| 61 | } |
| 62 | |
| 63 | /* symmetrize the covariance matrix in r. */ |
| 64 | r.topLeftCorner(n,n).template triangularView<StrictlyUpper>() = r.topLeftCorner(n,n).transpose(); |
| 65 | r.diagonal() = wa; |
| 66 | } |
| 67 | |
| 68 | } // end namespace internal |
| 69 | |
| 70 | } // end namespace Eigen |