Added superstructure and intake classes.

Created the superstucture, intake, and intake controller class,
had to alter some of the intake python and superstructure queue to fit.

Change-Id: Ieabcf288f6dd50c282a3bcb61ec13062f735872b
diff --git a/y2018/control_loops/superstructure/intake/intake.cc b/y2018/control_loops/superstructure/intake/intake.cc
new file mode 100644
index 0000000..7212fd3
--- /dev/null
+++ b/y2018/control_loops/superstructure/intake/intake.cc
@@ -0,0 +1,172 @@
+#include "y2018/control_loops/superstructure/intake/intake.h"
+
+#include <chrono>
+
+#include "aos/common/commonmath.h"
+#include "aos/common/controls/control_loops.q.h"
+#include "aos/common/logging/logging.h"
+#include "aos/common/logging/queue_logging.h"
+
+#include "y2018/constants.h"
+#include "y2018/control_loops/superstructure/intake/intake_delayed_plant.h"
+#include "y2018/control_loops/superstructure/intake/intake_plant.h"
+
+namespace y2018 {
+namespace control_loops {
+namespace superstructure {
+namespace intake {
+
+namespace chrono = ::std::chrono;
+using ::aos::monotonic_clock;
+
+constexpr double IntakeController::kDt;
+
+IntakeController::IntakeController()
+    : loop_(new StateFeedbackLoop<5, 1, 2, double, StateFeedbackPlant<5, 1, 2>,
+                                  StateFeedbackObserver<5, 1, 2>>(
+          superstructure::intake::MakeDelayedIntakeLoop())),
+      intake_range_(::y2018::constants::Values::kIntakeRange()) {
+  Y_.setZero();
+}
+
+void IntakeController::set_position(double spring_angle,
+                                    double output_position) {
+  // Update position in the model.
+  Y_ << spring_angle, (output_position + offset_);
+}
+
+double IntakeController::voltage() const { return loop_->U(0, 0); }
+
+void IntakeController::Reset() { reset_ = true; }
+
+void IntakeController::UpdateOffset(double offset) {
+  const double doffset = offset - offset_;
+  offset_ = offset;
+
+  loop_->mutable_X_hat(0) += doffset;
+  loop_->mutable_X_hat(2) += doffset;
+}
+
+double IntakeController::goal_angle(const double *unsafe_goal) {
+  if (unsafe_goal == nullptr) {
+    return 0;
+  } else {
+    return ::aos::Clip(*unsafe_goal, intake_range_.lower, intake_range_.upper);
+  }
+}
+
+void IntakeController::Update(bool disabled, const double *unsafe_goal) {
+  if (reset_) {
+    loop_->mutable_X_hat().setZero();
+    loop_->mutable_X_hat(0) = Y_(0) + Y_(1);
+    loop_->mutable_X_hat(2) = Y_(1);
+    reset_ = false;
+  }
+
+  double goal_velocity;
+  loop_->Correct(Y_);
+
+  if (unsafe_goal == nullptr) {
+    disabled = true;
+    goal_velocity = 0.0;
+  } else {
+    goal_velocity = ::aos::Clip(
+        ((goal_angle(unsafe_goal) - loop_->X_hat(0, 0)) * 6.0), -10.0, 10.0);
+  }
+  // Computes the goal.
+  loop_->mutable_R() << 0.0, goal_velocity, 0.0, goal_velocity,
+      (goal_velocity / (kGearRatio * kMotorVelocityConstant));
+
+  loop_->Update(disabled);
+}
+
+void IntakeController::SetStatus(IntakeSideStatus *status,
+                                 const double *unsafe_goal) {
+  status->goal_position = goal_angle(unsafe_goal);
+  status->goal_velocity = loop_->R(1, 0);
+  status->spring_position = loop_->X_hat(0);
+  status->spring_velocity = loop_->X_hat(1);
+  status->motor_position = loop_->X_hat(2);
+  status->motor_velocity = loop_->X_hat(3);
+  status->delayed_voltage = loop_->X_hat(4);
+}
+
+IntakeSide::IntakeSide(
+    const ::frc971::constants::PotAndAbsoluteEncoderZeroingConstants
+        &zeroing_constants)
+    : zeroing_estimator_(zeroing_constants) {}
+
+void IntakeSide::Reset() { state_ = State::UNINITIALIZED; }
+
+void IntakeSide::Iterate(const double *unsafe_goal,
+                         const control_loops::IntakeElasticSensors *position,
+                         control_loops::IntakeVoltage *output,
+                         control_loops::IntakeSideStatus *status) {
+  double intake_last_position_ = status->estimator_state.position;
+  zeroing_estimator_.UpdateEstimate(position->motor_position);
+
+  switch (state_) {
+    case State::UNINITIALIZED:
+      // Wait in the uninitialized state until the intake is initialized.
+      LOG(DEBUG, "Uninitialized, waiting for intake\n");
+      zeroing_estimator_.Reset();
+      controller_.Reset();
+      state_ = State::ZEROING;
+      break;
+
+    case State::ZEROING:
+      // Zero by not moving.
+      if (zeroing_estimator_.zeroed()) {
+        LOG(INFO, "Now zeroed\n");
+        controller_.UpdateOffset(zeroing_estimator_.offset());
+        state_ = State::RUNNING;
+      }
+      break;
+
+    case State::RUNNING:
+      if (!(zeroing_estimator_.zeroed())) {
+        LOG(ERROR, "Zeroing estimator is no longer zeroed\n");
+        state_ = State::UNINITIALIZED;
+      }
+      if (zeroing_estimator_.error()) {
+        LOG(ERROR, "Zeroing estimator error\n");
+        state_ = State::UNINITIALIZED;
+      }
+      // ESTOP if we hit the hard limits.
+      if ((status->motor_position) > controller_.intake_range_.upper ||
+          (status->motor_position) < controller_.intake_range_.lower) {
+        LOG(ERROR, "Hit hard limits\n");
+        state_ = State::ESTOP;
+      }
+      break;
+
+    case State::ESTOP:
+      LOG(ERROR, "Estop\n");
+      break;
+  }
+
+  const bool disable = (output == nullptr) || state_ != State::RUNNING;
+  controller_.set_position(position->spring_angle,
+                           position->motor_position.encoder);
+
+  controller_.Update(disable, unsafe_goal);
+
+  if (output) {
+    output->voltage_elastic = controller_.voltage();
+  }
+
+  // Save debug/internal state.
+  status->estimator_state = zeroing_estimator_.GetEstimatorState();
+  controller_.SetStatus(status, unsafe_goal);
+  status->calculated_velocity =
+      (status->estimator_state.position - intake_last_position_) /
+      controller_.kDt;
+  status->zeroed = zeroing_estimator_.zeroed();
+  status->estopped = (state_ == State::ESTOP);
+  status->state = static_cast<int32_t>(state_);
+}
+
+}  // namespace intake
+}  // namespace superstructure
+}  // namespace control_loops
+}  // namespace y2018