Run clang-format on the entire repo

This patch clang-formats the entire repo. Third-party code is
excluded.

I needed to fix up the .clang-format file so that all the header
includes are ordered properly. I could have sworn that it used to work
without the extra modification, but I guess not.

Signed-off-by: Philipp Schrader <philipp.schrader@gmail.com>
Change-Id: I64bb9f2c795401393f9dfe2fefc4f04cb36b52f6
diff --git a/y2016/control_loops/superstructure/superstructure_controls.h b/y2016/control_loops/superstructure/superstructure_controls.h
index a73883b..a827c00 100644
--- a/y2016/control_loops/superstructure/superstructure_controls.h
+++ b/y2016/control_loops/superstructure/superstructure_controls.h
@@ -3,12 +3,11 @@
 
 #include <memory>
 
-#include "frc971/control_loops/control_loop.h"
 #include "aos/util/trapezoid_profile.h"
+#include "frc971/control_loops/control_loop.h"
 #include "frc971/control_loops/profiled_subsystem.h"
 #include "frc971/control_loops/simple_capped_state_feedback_loop.h"
 #include "frc971/control_loops/state_feedback_loop.h"
-
 #include "frc971/zeroing/zeroing.h"
 #include "y2016/control_loops/superstructure/integral_arm_plant.h"
 #include "y2016/control_loops/superstructure/superstructure_position_generated.h"
@@ -105,7 +104,6 @@
   Intake();
 };
 
-
 class Arm : public ::frc971::control_loops::ProfiledSubsystem<6, 2> {
  public:
   Arm();