switched from fitpc/atom to prime/linux

Also removed a few old things that had nothing reasonable to be changed
to.
diff --git a/frc971/control_loops/angle_adjust/angle_adjust.gyp b/frc971/control_loops/angle_adjust/angle_adjust.gyp
index 323cb56..afdabb2 100644
--- a/frc971/control_loops/angle_adjust/angle_adjust.gyp
+++ b/frc971/control_loops/angle_adjust/angle_adjust.gyp
@@ -58,7 +58,7 @@
         '<(AOS)/common/common.gyp:time',
         '<(AOS)/common/common.gyp:timing',
         'angle_adjust_loop',
-        '<(AOS)/atom_code/atom_code.gyp:init',
+        '<(AOS)/linux_code/linux_code.gyp:init',
         '<(AOS)/common/common.gyp:queues',
       ],
     },
@@ -71,7 +71,7 @@
       'dependencies': [
         'angle_adjust_lib',
         'angle_adjust_loop',
-        '<(AOS)/atom_code/atom_code.gyp:init',
+        '<(AOS)/linux_code/linux_code.gyp:init',
       ],
     },
   ],
diff --git a/frc971/control_loops/angle_adjust/angle_adjust_csv.cc b/frc971/control_loops/angle_adjust/angle_adjust_csv.cc
index 109af56..5da6ca9 100644
--- a/frc971/control_loops/angle_adjust/angle_adjust_csv.cc
+++ b/frc971/control_loops/angle_adjust/angle_adjust_csv.cc
@@ -2,7 +2,7 @@
 
 #include "aos/common/control_loop/Timing.h"
 #include "aos/common/time.h"
-#include "aos/atom_code/init.h"
+#include "aos/linux_code/init.h"
 #include "frc971/control_loops/angle_adjust/angle_adjust_motor.q.h"
 
 using ::frc971::control_loops::angle_adjust;
diff --git a/frc971/control_loops/angle_adjust/angle_adjust_main.cc b/frc971/control_loops/angle_adjust/angle_adjust_main.cc
index c7f725b..1a90749 100644
--- a/frc971/control_loops/angle_adjust/angle_adjust_main.cc
+++ b/frc971/control_loops/angle_adjust/angle_adjust_main.cc
@@ -1,6 +1,6 @@
 #include "frc971/control_loops/angle_adjust/angle_adjust.h"
 
-#include "aos/atom_code/init.h"
+#include "aos/linux_code/init.h"
 
 int main() {
   ::aos::Init();
diff --git a/frc971/control_loops/drivetrain/drivetrain.gyp b/frc971/control_loops/drivetrain/drivetrain.gyp
index 53bb16c..7821c39 100644
--- a/frc971/control_loops/drivetrain/drivetrain.gyp
+++ b/frc971/control_loops/drivetrain/drivetrain.gyp
@@ -77,7 +77,7 @@
         'drivetrain_main.cc',
       ],
       'dependencies': [
-        '<(AOS)/atom_code/atom_code.gyp:init',
+        '<(AOS)/linux_code/linux_code.gyp:init',
         'drivetrain_lib',
         'drivetrain_loop',
       ],
diff --git a/frc971/control_loops/drivetrain/drivetrain_main.cc b/frc971/control_loops/drivetrain/drivetrain_main.cc
index e3fc306..f3f0ddd 100644
--- a/frc971/control_loops/drivetrain/drivetrain_main.cc
+++ b/frc971/control_loops/drivetrain/drivetrain_main.cc
@@ -1,6 +1,6 @@
 #include "frc971/control_loops/drivetrain/drivetrain.h"
 
-#include "aos/atom_code/init.h"
+#include "aos/linux_code/init.h"
 
 int main() {
   ::aos::Init();
diff --git a/frc971/control_loops/index/index.gyp b/frc971/control_loops/index/index.gyp
index 014f266..dc1c06d 100644
--- a/frc971/control_loops/index/index.gyp
+++ b/frc971/control_loops/index/index.gyp
@@ -60,7 +60,7 @@
         'index_main.cc',
       ],
       'dependencies': [
-        '<(AOS)/atom_code/atom_code.gyp:init',
+        '<(AOS)/linux_code/linux_code.gyp:init',
         'index_lib',
         'index_loop',
       ],
diff --git a/frc971/control_loops/index/index_main.cc b/frc971/control_loops/index/index_main.cc
index c542268..321d74c 100644
--- a/frc971/control_loops/index/index_main.cc
+++ b/frc971/control_loops/index/index_main.cc
@@ -1,6 +1,6 @@
 #include "frc971/control_loops/index/index.h"
 
-#include "aos/atom_code/init.h"
+#include "aos/linux_code/init.h"
 
 int main() {
   ::aos::Init();
diff --git a/frc971/control_loops/matlab/drivetrain_controller.m b/frc971/control_loops/matlab/drivetrain_controller.m
index b51af99..f9ee4be 100644
--- a/frc971/control_loops/matlab/drivetrain_controller.m
+++ b/frc971/control_loops/matlab/drivetrain_controller.m
@@ -46,7 +46,7 @@
 
 % Plot what we computed
 
-fd = fopen('/home/aschuh/frc971/2012/trunk/src/atom_code/control_loops/Drivetrain.mat', 'w');
+fd = fopen('/home/aschuh/frc971/2012/trunk/src/prime/control_loops/Drivetrain.mat', 'w');
 n = 1;
 sm = [];
 writeMatHeader(fd, size(dm.a, 1), size(dm.b, 2));
diff --git a/frc971/control_loops/shooter/shooter.gyp b/frc971/control_loops/shooter/shooter.gyp
index 64e3a20..70f635f 100644
--- a/frc971/control_loops/shooter/shooter.gyp
+++ b/frc971/control_loops/shooter/shooter.gyp
@@ -70,7 +70,7 @@
         'shooter_main.cc',
       ],
       'dependencies': [
-        '<(AOS)/atom_code/atom_code.gyp:init',
+        '<(AOS)/linux_code/linux_code.gyp:init',
         'shooter_lib',
         'shooter_loop',
       ],
diff --git a/frc971/control_loops/shooter/shooter_main.cc b/frc971/control_loops/shooter/shooter_main.cc
index c52db73..e4e25ad 100644
--- a/frc971/control_loops/shooter/shooter_main.cc
+++ b/frc971/control_loops/shooter/shooter_main.cc
@@ -1,6 +1,6 @@
 #include "frc971/control_loops/shooter/shooter.h"
 
-#include "aos/atom_code/init.h"
+#include "aos/linux_code/init.h"
 
 int main() {
   ::aos::Init();
diff --git a/frc971/control_loops/wrist/wrist.gyp b/frc971/control_loops/wrist/wrist.gyp
index d66bf6c..60895ca 100644
--- a/frc971/control_loops/wrist/wrist.gyp
+++ b/frc971/control_loops/wrist/wrist.gyp
@@ -58,7 +58,7 @@
         'wrist_main.cc',
       ],
       'dependencies': [
-        '<(AOS)/atom_code/atom_code.gyp:init',
+        '<(AOS)/linux_code/linux_code.gyp:init',
         'wrist_lib',
         'wrist_loop',
       ],
diff --git a/frc971/control_loops/wrist/wrist_main.cc b/frc971/control_loops/wrist/wrist_main.cc
index 0aeec42..3da6d62 100644
--- a/frc971/control_loops/wrist/wrist_main.cc
+++ b/frc971/control_loops/wrist/wrist_main.cc
@@ -1,6 +1,6 @@
 #include "frc971/control_loops/wrist/wrist.h"
 
-#include "aos/atom_code/init.h"
+#include "aos/linux_code/init.h"
 
 int main() {
   ::aos::Init();