switched from fitpc/atom to prime/linux

Also removed a few old things that had nothing reasonable to be changed
to.
diff --git a/frc971/autonomous/auto_main.cc b/frc971/autonomous/auto_main.cc
index 8ce82f8..e8914c6 100644
--- a/frc971/autonomous/auto_main.cc
+++ b/frc971/autonomous/auto_main.cc
@@ -2,7 +2,7 @@
 
 #include "aos/common/control_loop/Timing.h"
 #include "aos/common/time.h"
-#include "aos/atom_code/init.h"
+#include "aos/linux_code/init.h"
 #include "aos/common/logging/logging.h"
 #include "frc971/autonomous/auto.q.h"
 #include "frc971/autonomous/auto.h"
diff --git a/frc971/autonomous/autonomous.gyp b/frc971/autonomous/autonomous.gyp
index 526904c..c581198 100644
--- a/frc971/autonomous/autonomous.gyp
+++ b/frc971/autonomous/autonomous.gyp
@@ -46,7 +46,7 @@
         'auto_main.cc',
       ],
       'dependencies': [
-        '<(AOS)/atom_code/atom_code.gyp:init',
+        '<(AOS)/linux_code/linux_code.gyp:init',
         'auto_queue',
         'auto_lib',
       ],